[GSoC] bio-maf 0.2.0 (and Kyoto Cabinet gem for JRuby)

[Clayton Wheeler]

Hi all,

I've released version 0.2.0 of bio-maf for BioRuby:

http://csw.github.com/bioruby-maf/blog/2012/07/09/bio-maf_0.2.0/

Notably, this release includes removal of gaps remaining after filtering out sequences, and 'tiling' multiple alignment blocks together along with reference sequence data.

Also, last week I released my Kyoto Cabinet support for JRuby as a separate gem. It's now approaching parity with the standard Ruby library for Kyoto Cabinet.

http://csw.github.com/bioruby-maf/blog/2012/07/02/kyoto_cabinet_support_for_jruby/

Clayton Wheeler
cswh at umich.edu