[GSoC] GSoC Project Update -- 8

Wibowo Arindrarto w.arindrarto at gmail.com
Thu Jun 28 13:26:40 UTC 2012


Hello everyone,

Here is my update for the last week:
http://bow.web.id/blog/2012/06/fasta-comes-to-searchio/

To summarize it here:
* SearchIO now supports Fasta indexing and parsing. The code
integrates some part of the FastaIO module in AlignIO, but with more
new addition to enable parsing into SearchIO objects hierarchy.
* Improved the text output of common SearchIO objects. The text
outputs (using str() or print) are now easier to interpret.
* (not mentioned in the blog post) Tests for Fasta parsing and
indexing, along with more tests for the common objects.

That's all I have for this week :). Next week, I will be adding more
formats to support into the submodule.

regards,
Bow



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