[EMBOSS] contributing to emboss

[David Bauer]

Hi Afif,

There are some features in EMBOSS, which are not easy to find 😊.
If you use e.g. "transeq -help -verbose", this will then show also the Associated and General qualifiers and there you will see the -filter option.

David

-----Ursprüngliche Nachricht-----
Von: EMBOSS <emboss-bounces at mailman.open-bio.org> Im Auftrag von Afif Elghraoui
Gesendet: 22 June 2022 09:55
An: emboss at mailman.open-bio.org
Betreff: Re: [EMBOSS] contributing to emboss

Wow, thank you Markus and David. I never noticed that option on the tool -help menus, but this changes everything :)

thanks and regards
Afif

On 6/22/22 00:52, David Bauer wrote:
> Hi All,
> 
> If you want the -filter as default, this can be done by setting an environment variable:
> setenv EMBOSS_FILTER 1
> 
> Best,
> David
> 
> -----Ursprüngliche Nachricht-----
> Von: EMBOSS <emboss-bounces at mailman.open-bio.org> Im Auftrag von 
> Kiefer, Dr. Markus
> Gesendet: 22 June 2022 09:11
> An: emboss at mailman.open-bio.org
> Betreff: Re: [EMBOSS] contributing to emboss
> 
> Hi Afif,
> 
> do you know about the -filter option? But I agree, that should be the default.
> 
> I think the retrieval functionality is in need of an overhaul. There should be an easier way to access modern Genbank for example, while e.g. SRS and GCG are much less important, meanwhile.
> 
> Best,
> Markus
> 
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