[EMBOSS] error with dbxflat

Jean Mao maoj at helix.nih.gov
Thu May 22 15:57:13 UTC 2014


I ran into problem while processing the most recent refseq nt database 
with dbxflat. The script has been running for years without problem 
until this release 65.

dbxflat -dbname=refseqnt -dbresource=embl -idformat=gb -directory='.' 
-fields='id,acc' -filenames='complete*.*.gbff' -indexoutdir='.' 
-release=65 -date=05/19/14 
Index a flat file database using b+tree indices
Warning: id 'NZ_CAAF010000001' too long, truncating to idlen 15

    EMBOSS An error in ajindex.c at line 1325:
ReadBucket: Bucket too full

Any help will be appreciated. Thank you.

Jean Mao

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