[EMBOSS] Working with Geneseq databases

[Rozenbaum, Daniel (Biocceleration Inc)]

Dear all,

Does anyone have experience getting EMBOSS to work with the Geneseq database distributed by Thomson Reuters ( http://thomsonreuters.com/products_services/science/science_products/a-z/geneseq/ ) ? This database comes in "EMBL-like" format that uses some line codes that are not defined in EMBL format proper, which in our experiments has caused problems when, for example, trying to index these databases as EMBL-formatted.
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Daniel Rozenbaum
Biocceleration, Inc.
OCIO/Office of Application Engineering and Development/Patent System Division
600 Dulany St., Alexandria, VA 22314