[EMBOSS] Slight change in fuzznuc output

[Aengus Stewart]

Errr.............bit surprised by this. the "Pattern_name" field has changed.  Previously it was a reference - now it is the reference and the actual pattern............

intentional?

I know the results are different - its just to illustrate the format change.

pre 6.4.0.0 output

#=======================================
#
# Sequence: chr1_145549491_145550484     from: 1   to: 200
# HitCount: 4
#
# Pattern_name Mismatch Pattern
# pattern1            3 CC[AT](6)GG
#
# Complement: Yes
#
#=======================================

   Start     End  Strand Pattern_name Mismatch Sequence
     168     177       + pattern1            2 GCTATATAAG
     169     178       + pattern1            1 CTATATAAGG
     168     177       - pattern1            2 CTTATATAGC
     169     178       - pattern1            1 CCTTATATAG

#---------------------------------------
#---------------------------------------


post 6.4.0.0 output

#=======================================
#
# Sequence: chr1_145549491_145550484     from: 1   to: 200
# HitCount: 2
#
# Pattern_name Mismatch Pattern
# pattern1            3 CC[AT](6)GG
#
# Complement: No
#
#=======================================

   Start     End  Strand Pattern_name          Mismatch Sequence
     101     110       + pattern1: CC[AT](6)GG        2 GCTATATAAG
     102     111       + pattern1: CC[AT](6)GG        1 CTATATAAGG

#---------------------------------------
#---------------------------------------



Cheers
Aengus

-- 
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Aengus Stewart                                 Tel: +44 (0)20 7269 3679
Head of Bioinformatics and BioStatistics
CRUK London Research Institute
Lincoln's Inn Fields, Holborn, London, WC2A 3LY, UK
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