[EMBOSS] HELP! fdnapars fails with undefined symbol error - ajSeqdbInit

[Marvin Stodolsky]

Wolfgang

> 1.  Boot with an older kernel - probably the latest one from 10.4, if it works with 10.10;
really is expected to be trouble free.  Linux strives to maintain
backward compatibility.

In the course of aiding modem users, I have and boot with numerous
older kernels on my Systems.
Your worst case scenario is that a bootup with an older kernel will
fail.  Then you will have to reboot with the current one. Merely
having an older kernel installed will IN NO WAY interfere with usage
of more recent kernels.

Marvin

On Thu, Mar 10, 2011 at 10:26 AM, Wolfgang Rumpf
<wolfgang.rumpf at rescentris.com> wrote:
> So as I understand it my options are:
>
> 1.  Boot with an older kernel - probably the latest one from 10.4, if it works with 10.10;
> 2.  Recompile EMBOSS myself;
> 3.  Download and install the 11.04 (unreleased) Emboss/Embassy installs;
> 4.  Wait for 11.04 to come out
>
> Of all of these the "simplest" (other than just waiting) would probably be to try to boot with an older kernel - I don't want to bring the rest of the EMBOSS system down for an extended time period, perhaps very extended if the compilation/install doesn't go as planned.
>
> Sound about right?
>
> Wolfgang
>
> Dr. Wolfgang Rumpf
> Product Specialist, Rescentris Inc.
> --------------------------------------------------------
> wolfgang.rumpf at rescentris.com
>
> Mobile - (614) 638-6797
> Skype - wolfgang.rumpf
>
>
>
>
> On Mar 9, 2011, at 8:37 PM, Charles Plessy wrote:
>
>> Le Wed, Mar 09, 2011 at 07:48:41PM -0500, Marvin Stodolsky a écrit :
>>>
>>> RE:  undefined symbol: ajSeqdbInit
>>> While not an expert at all, on Emboss code,
>>> this type of error is typically due to (Emboss) binaries Not Yet
>>> being compiled with the newer linux-header resources.  Pending that
>>> compilation by the Emboss maintenance team, if you run the compile
>>> from Emboss source code on your own  Ubuntu 10.10 system, all will
>>> likely be  OK.
>>
>> Dear Wolfgang,
>>
>> you can also give a try to the emboss and embassy-phylip from 11.04 Ubuntu
>> distribution. If you can install them on 10.10, they should work well, and
>> they are up to date.
>>
>> http://packages.ubuntu.com/natty/emboss
>> http://packages.ubuntu.com/natty/embassy-phylip
>>
>> Have a nice day,
>>
>> --
>> Charles Plessy
>> Debian Med packaging team
>> http://www.debian.org/devel/debian-med
>> Tsurumi, Kanagawa, Japan
>> _______________________________________________
>> EMBOSS mailing list
>> EMBOSS at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/emboss
>
>
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