[EMBOSS] anarchistic results in einverted

[Peter Rice]

dear Heikki,

On 06/22/11 13:53, Heikki Salavirta wrote:
> Hello,
>
> I've been running einverted queries with the same sequence, with the
> only difference in parameters being max repeat (e.g. 1000, 2000, 4000,
> 6000, 8000, 10000 & 20000). Other parameters are gap: 12, threshold: 50,
> match: 3 & mismatch: -4.
>
> I'd expect that this would result in an ever increasing number of
> results, as the max repeat parameter increases. However, this is not
> what I'm seeing.

We have some fixes to einverted in the next release.

Can you please send your input sequence to me so I can test what the 
results are from the new version.

regards,

Peter  Rice
EMBOSS Team