[EMBOSS] dreg: does it search both strands?
jison at ebi.ac.uk
Thu Feb 10 16:42:34 UTC 2011
Didn't see a reply to you, sorry.
Anyhow, dreg will search the sequence as given. This is taken as the sense/coding/+ strand.
If you specify -sreverse (which is available to any applications that read sequences) it will I
think search the reverse complement of that sequence instead.
> Hello fellow EMBOSS fans,
> I am using the dreg program to search the human genome for my favorite
> motif. I was unable to find any information regarding the meaning of
> the strand information in the output. Does dreg search both strands or
> will it always return "+" as the strand designation of the hits that it
> Thanks for your continued support and development of this fantastic tool!
> Lionel "Lee" Brooks 3rd
> Dartmouth Genetics Grad Student
> EMBOSS mailing list
> EMBOSS at lists.open-bio.org
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