[EMBOSS] Galaxy and EMBOSS

[Peter Rice]

On 09/03/2010 16:30, Steve Taylor wrote:

> To give a bit of history, we are fairly new to using Galaxy and
> previously we used EMBOSS Explorer as our main web interface. With this
> we found when EMBOSS releases changed lots of things broke, so we ended
> up staying with EMBOSS v3. I am hoping this is not going to be true for
> EMBOSS/Galaxy because they are both great tools and I want them to be
> used routinely without us/users worrying if things are going to break,
> especially if they are going to be incorporated routinely into workflows.
>> Maybe if you provide a list of problems/incompatibilities and resend
>> this to
>> the galaxy mailing list, you will get a response...

Yes please do ... I am on the Galaxy list too.

> 14: antigenic on data 13
> An error occurred running this job: Error: Unable to read feature tags
> data file 'Etags.gff3protein'

Could be you have more than one version of EMBOSS running. That looks like 
a pure EMBOSS error suggesting EMBOSS 6 is trying to use EMBSOS5's data 
directory. Should be fixable by copying the missing file.

Peter