[EMBOSS] whichdb error
Veronique.Martin at jouy.inra.fr
Veronique.Martin at jouy.inra.fr
Mon May 25 14:22:46 UTC 2009
Hi all,
I have this error with whichdb command:
-----------
whichdb -showall
Search all sequence databases for an entry and retrieve it
ID or Accession number: L07770
Output file [stdout]:
# Trying 'gb_rod:l07770'
# Failed 'gb_rod:l07770'
# Trying 'gb_pln:l07770'
# Failed 'gb_pln:l07770'
# Trying 'gp_syn:l07770'
# Failed 'gp_syn:l07770'
# Trying 'gb_pri:l07770'
# Failed 'gb_pri:l07770'
# Trying 'genbankwgs:l07770'
# Failed 'genbankwgs:l07770'
# Trying 'nr80:l07770'
# Failed 'nr80:l07770'
# Trying 'PRINTS:l07770'
Warning: Cannot open division file '<null>' for database 'PRINTS'
Warning: seqCdQry failed
# Failed 'PRINTS:l07770'
# Trying 'opsdw:l07770'
# Failed 'opsdw:l07770'
# Trying 'emblwgs_hum:l07770'
EMBOSS An error in ajindex.c at line 2429:
GetKeys: No keys in node
------------
However, it's ok for this ID, because for example,
infoseq or other commands (seqret...) runs correctly, as you can see
bellow:
-------------
infoseq genbank:l07770
Display basic information about sequences
USA Database Name Accession Type
Length %GC Description
genbank-id:XELRHODOP genbank XELRHODOP L07770 N
1684 45.72 Xenopus laevis rhodopsin mRNA, complete cds.
-------------
I run emboss 6.0.1
Any help?
Thanks
Veronique
-------------------------------------------------
Véronique MARTIN
INRA - Unité Mathématique, Informatique et Génome
78352 Jouy-en Josas cedex
tel.: 01 34 65 29 74
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