[EMBOSS] Problems installing EMBASSY / PHYLIPNEW

[michael watson (IAH-C)]

Hello

 

I did this on a test server a few weeks ago and wrote a script and it
worked.

 

Now I come to the production server - well, I get some errors.  Same OS,
same tar balls.  Very frustrating.  Can anyone help?

 

I have PHYLIPNEW-3.67 unpacked in EMBOSS-6.0.1/embassy/PHYLIPNEW-3.67.
In that directory, I run configure and then make

 

I get a variety of errors, but this time it's:

 

Making all in src

make[1]: Entering directory
`/home/bioinfvm/EMBOSS-6.0.1/embassy/PHYLIPNEW-3.67/src'

gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\"
-DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"PHYLIPNEW\"
-DVERSION=\"3.67\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1
-DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1
-DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1
-DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_DIRENT_H=1
-DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1
-DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1
-DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1
-DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DHAVE_LIBM=1
-DPLD_png=1 -I. -I../include -I../../../ajax -I../../../nucleus
-I../../../plplot  -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE  -DLENDIAN -DNO_AUTH  -O2
-D__amd64__ -MT clique.o -MD -MP -MF .deps/clique.Tpo -c -o clique.o
clique.c

mv -f .deps/clique.Tpo .deps/clique.Po

gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\"
-DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"PHYLIPNEW\"
-DVERSION=\"3.67\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1
-DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1
-DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1
-DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_DIRENT_H=1
-DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1
-DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1
-DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1
-DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DHAVE_LIBM=1
-DPLD_png=1 -I. -I../include -I../../../ajax -I../../../nucleus
-I../../../plplot  -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE  -DLENDIAN -DNO_AUTH  -O2
-D__amd64__ -MT disc.o -MD -MP -MF .deps/disc.Tpo -c -o disc.o disc.c

mv -f .deps/disc.Tpo .deps/disc.Po

gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\"
-DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"PHYLIPNEW\"
-DVERSION=\"3.67\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1
-DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1
-DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1
-DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_DIRENT_H=1
-DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1
-DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1
-DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1
-DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DHAVE_LIBM=1
-DPLD_png=1 -I. -I../include -I../../../ajax -I../../../nucleus
-I../../../plplot  -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE  -DLENDIAN -DNO_AUTH  -O2
-D__amd64__ -MT phylip.o -MD -MP -MF .deps/phylip.Tpo -c -o phylip.o
phylip.c

mv -f .deps/phylip.Tpo .deps/phylip.Po

/bin/sh ../libtool --tag=CC   --mode=link gcc  -O2 -D__amd64__   -o
fclique clique.o disc.o phylip.o ../../../nucleus/libnucleus.la
../../../ajax/libajax.la ../../../plplot/libeplplot.la -L/usr/lib64
-lX11  -lXaw -lXt -lm  -lgd -lpng -lz -lm

mkdir .libs

gcc -O2 -D__amd64__ -o .libs/fclique clique.o disc.o phylip.o
../../../nucleus/.libs/libnucleus.so ../../../ajax/.libs/libajax.so
../../../plplot/.libs/libeplplot.so -L/usr/lib64 -lX11 -lXaw -lXt -lgd
-lpng -lz -lm  -Wl,--rpath -Wl,/usr/local/lib

/usr/bin/ld: cannot find -lXaw

collect2: ld returned 1 exit status

make[1]: *** [fclique] Error 1

make[1]: Leaving directory
`/home/bioinfvm/EMBOSS-6.0.1/embassy/PHYLIPNEW-3.67/src'

make: *** [all-recursive] Error 1

 

Any help would be appreciated.

 

Thanks

Mick

 

Head of Bioinformatics
Institute for Animal Health
Compton
Berks
RG20 7NN
01635 578411 

 

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