[EMBOSS] How to find protein sequences in a given genome using CDS information

Nermin Celik n.celik at pgrad.unimelb.edu.au
Wed Feb 4 03:24:34 UTC 2009


Hi,

I have the CDS section of a feature table and a genome of an organism.
Which EMBOSS program will allow me to extract the coding regions defined
in the CDS file from the genome and then translate them to protein
sequences?

Example of CDS file:
FT   CDS             166..231
FT                   /systematic_id="ROD00001"
FT   CDS             313..2775
FT                   /systematic_id="ROD00011"
FT   CDS             2778..3707

Thank you.
Nermin




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