[EMBOSS] How to find protein sequences in a given genome using CDS information
Nermin Celik
n.celik at pgrad.unimelb.edu.au
Wed Feb 4 03:24:34 UTC 2009
Hi,
I have the CDS section of a feature table and a genome of an organism.
Which EMBOSS program will allow me to extract the coding regions defined
in the CDS file from the genome and then translate them to protein
sequences?
Example of CDS file:
FT CDS 166..231
FT /systematic_id="ROD00001"
FT CDS 313..2775
FT /systematic_id="ROD00011"
FT CDS 2778..3707
Thank you.
Nermin
More information about the EMBOSS
mailing list