[EMBOSS] Genpept entry in MSE

[Steve Taylor]

Peter wrote:
> On Tue, Dec 15, 2009 at 12:14 PM, Steve Taylor
> <stephen.taylor at imm.ox.ac.uk> wrote:
>> Hi,
>>
>> I am trying to load a Genpept entry into MSE, EMBOSS Version 6.0.1 on
>> Fedora. Unfortunately it doesn't like the LOCUS line.
>>
>> It loads, but warns:
>>
>> Warning: bad Genbank LOCUS line 'LOCUS       ACN78416                 225 aa
>>          linear   BCT 21-MAR-2009'
>>
>> Changing the aa to bp fixes it.
> 
> What command line did you use? If you specified format "genbank",
> I think you should use format name "genpept" or "refseqp" instead:
> http://emboss.sourceforge.net/docs/themes/SequenceFormats.html

I didn't specify any format. I assumed it would pick it up...

However, I still get the error if I use

mse -sformat1 genpept -sequence ACN78417.pep

Is this what you mean?

Steve