[EMBOSS] EMBOSS 6.1.0 patch 1.3
Peter Rice
pmr at ebi.ac.uk
Mon Dec 14 13:44:10 UTC 2009
On 12/14/2009 11:59 AM, Charles Plessy wrote:
> There were two issues that were discussed previously on the EMBOSS user list or
> on the sourceforge tracker, that I do not see fixed in this patch. The EMBOSS
> package distributed by Debian contains a patch for each of them.
>
> 1) To prevent vectorstrip to discard FASTQ qualities.
> http://git.debian.org/?p=debian-med/emboss.git;a=blob;f=debian/patches/transient-vectorstrip.patch;h=c4d8fd1e6c6d223ec8664b1aa08171407f9ace55;hb=HEAD
> https://sourceforge.net/tracker/index.php?func=detail&aid=2886368&group_id=93650&atid=605034
Sorry, we missed that update in goiing through the changes in the
ajseq.c file.
We will add it to the next patch.
> 2) To help tfm to find the HTML documentation.
> http://git.debian.org/?p=debian-med/emboss.git;a=blob;f=debian/patches/tfm-html.patch;h=c0595eb5008f53fec27e0ba4ff144c6385c6acdd;hb=HEAD
> https://sourceforge.net/tracker/?func=detail&aid=2877960&group_id=93650&atid=605031
This one is wrong. If the documentation is not found in the install
directory (which it should be with a standard 'make install') tfm looks
in ajNamValueBaseDir which is the top level directory.
The Debian patch uses ajNamValueRootDir which is the emboss/
subdirectory used when finding uninstalled ACD files.
embossversion -full shows both these paths.
Hope this helps,
Peter Rice
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