[EMBOSS] Jemboss installation error

[Eric Userlist]

Thanks Mahmut. I also think that jemboss should be automatically compiled
with emboss. Maybe someone can provide a more updated installation
procedure. Thanks all.

Eric

On Tue, Apr 7, 2009 at 1:19 AM, Mahmut Uludag <uludag at ebi.ac.uk> wrote:

> Hi Eric,
>
> > I get the following errors after
> > "successful" installing jemboss:
> >
> > Exception in thread "main" java.lang.NoClassDefFoundError:
> > org.emboss.jemboss.Jemboss
> >    at gnu.gcj.runtime.FirstThread.run() (/usr/lib/libgcj.so.5.0.0)
> >    at _Jv_ThreadRun(java.lang.Thread) (/usr/lib/libgcj.so.5.0.0)
> >    at _Jv_RunMain(java.lang.Class, byte const, int, byte const, boolean)
> > (/usr/lib/libgcj.so.5.0.0)
>
> I guess you followed the install procedure described on the following
> page. I ask this because in my initial attempts i thought jemboss would
> automatically come out of the box when i install emboss.
>
> http://emboss.sourceforge.net/Jemboss/install/standalone.html
>
> The second thing to check would be whether you change your current
> working directory to your ${JEMBOSS_INSTALL_DIR}/share/EMBOSS/jemboss
> directory before running the runJemboss.sh script. If you find it
> inconvenient to change directory each time before running the script you
> can set the JEMBOSS_HOME variable at the top of the script to the above
> directory.
>
> Regards,
> Mahmut
>
>
>