[EMBOSS] fuzznuc option report

Daniel Barker db60 at st-andrews.ac.uk
Tue Nov 4 16:00:26 UTC 2008

 >> With fuzznuc how can I get in the report, the total sequences
 >> that there are in my sequence list.

If your sequences are in Fasta format, it's not too difficult to count 
sequences as separate step, prior to running the program, e.g. on Linux 
or OS X:

grep -c '>' seqfile.fa

Remember the single quotes, or else it won't work and even worse, you'll 
delete all sequences in the sequence file!

Best wishes,


Daniel Barker
The University of St Andrews is a charity registered in Scotland :
No SC013532

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