[EMBOSS] extracting "promoter" regions

Guy Bottu gbottu at vub.ac.be
Fri Jan 25 15:54:36 UTC 2008


Shrish Tiwari wrote:
> Is there a way using EMBOSS programs to extract 2kb region around the transcription start site. When I use
> extractfeat -type mrna -before 1000 -after 1000
> I get 2kb regions around every splice site apart from what I need. Any suggestions?

Try adding the parameter -join

	Regards,
	Guy Bottu,
	Belgian



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