[EMBOSS] A question about CON entries
Guy Bottu
gbottu at vub.ac.be
Fri Feb 1 16:03:35 UTC 2008
Dear friends,
As you know, the databanks EMBL, GenBank and RefSeq contain entries that do not
contain the sequence itself, but instead "join" information about how to compose
the sequence using ranges from other sequences. When the databank has been
installed under EMBOSS the sequence is not available, since EMBOSS wil give a
"Warning: Sequence has zero length". Do you think that EMBOSS should be able to
handle such cases ? And in the meantime, do you know about tools that can, given
as input the "CON" sequence and a databank with sequences, assemble on-the-fly
the sequence ?
Guy Bottu,
BEN
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