[EMBOSS] can vectorstrip deal with indels?

Marcus Claesson marcusclaesson at gmail.com
Tue Aug 26 10:07:04 UTC 2008


Hi,

According to the docs of vectorstrip it has a mismatch parameter which sets
the max allowed mismatch as a percentage. However, my input sequences
sometimes contain not just a mismatched character, but also a nucletide
insertion/deletion. It seems like vectorstrip can't handle this. Is this
correct or is there a way to introduce indels as well?

Many thanks,
Marcus



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