[EMBOSS] dbigcg/dbxgcg and GCG 11

Zheng Jin Tu ztu at msi.umn.edu
Mon Nov 5 16:53:40 UTC 2007


I am using dbigcg for indexing gcgdb for emboss use

 setenv GCGDB /usr/local/db/gcgdb/current
 dbigcg -idformat genbank -directory $GCGDB/gcggenbank -filename '*.seq' \
   -dbname genbank -release 160 -date 09/01/07 -outfile gb_dbigcg.log &

Thanks,  TU

----------------------------------------------------
On Mon, 5 Nov 2007, john walshaw (JIC) wrote:

> 
> Hello,
> 
> am I right in thinking that dbigcg and dbxgcg don't support GCG 11
> database formats?
> 
> best wishes,
> 
> Dr John Walshaw
> Department of Computational & Systems Biology
> John Innes Centre
> Norwich Research Park, Colney, Norwich NR4 7UH,   UK
> 
> 
> _______________________________________________
> EMBOSS mailing list
> EMBOSS at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/emboss
> 

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