[EMBOSS] Searching for repeats in fuzznuc

[Steve Taylor]

Hi,

I would like to search for a specific repeat using fuzznuc. It is pretty easy using a regexp in preg (yes, I know preg should really only be used for protein sequences:-)) via

preg -pattern '(TG{5,20}){2,10}'

but is there a way to do something similar in fuzznuc, since I would like to introduce mismatches.

Thanks for any help,

Steve
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Medical Sciences Division
Weatherall Institute of Molecular Medicine/Sir William Dunn School
Oxford University