[EMBOSS] sorting and/or filtering EMBOSS water output by score

Timur Shtatland tshtatland at gmail.com
Tue Jun 5 16:09:32 UTC 2007


Hi,

Can EMBOSS water produce the output in which the hits are reverse sorted
and/or filtered by score?
For example, I would like to use something like this to order alignments
from best to worst, and display only alignments above a certain minimum
score:

water [other options] -orderby score -scoremin 30.0

By default, alignments are displayed in the order of sequence occurrence in
the input file, and all alignments are shown.

Thank you.

Timur Shtatland



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