[EMBOSS] Can't get seqmatchall to run, please help me

Peter Rice pmr at ebi.ac.uk
Mon Jun 4 15:28:04 UTC 2007


nicolas roggli wrote:
> % seqmatchall
> All-against-all comparison of a set of sequences
> Input sequence set: rtt109_h_puta*
> Segmentation fault (core dumped)

seqmatchall works for me, with a set of FASTA format seqeunces.

I suspect there is a problem in reading one of the sequence files. Is 
"tt109_h_puta." a real sequence file? (the other files all have numbers)

If you run with -debug on the command line the program will create a file 
seqmatchall.dbg. If you sent this file to me I can see where the fault occurs.

regards,

Peter Rice





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