[EMBOSS] Can't get seqmatchall to run, please help me

nicolas roggli Nicolas.Roggli at molbio.unige.ch
Fri Jun 1 08:28:07 UTC 2007


hello
I have this list of files that I want to process with  seqmatchall.

-rw-r--r--    1 nicolas  user        3394 Jun  1 02:29 rtt109_h_puta.
-rw-r--r--    1 nicolas  user        2692 Jun  1 02:29 rtt109_h_puta_1.
-rw-r--r--    1 nicolas  user        3529 Jun  1 02:29 rtt109_h_puta_10.
-rw-r--r--    1 nicolas  user        3603 Jun  1 02:29 rtt109_h_puta_11.
-rw-r--r--    1 nicolas  user        3687 Jun  1 02:29 rtt109_h_puta_12.
-rw-r--r--    1 nicolas  user        2707 Jun  1 02:29 rtt109_h_puta_2.
-rw-r--r--    1 nicolas  user        2691 Jun  1 02:29 rtt109_h_puta_3.
-rw-r--r--    1 nicolas  user        2681 Jun  1 02:29 rtt109_h_puta_4.
-rw-r--r--    1 nicolas  user        2666 Jun  1 02:29 rtt109_h_puta_5.
-rw-r--r--    1 nicolas  user        2963 Jun  1 02:29 rtt109_h_puta_6.
-rw-r--r--    1 nicolas  user        2669 Jun  1 02:29 rtt109_h_puta_7.
-rw-r--r--    1 nicolas  user        2966 Jun  1 02:29 rtt109_h_puta_8.
-rw-r--r--    1 nicolas  user        3817 Jun  1 02:29 rtt109_h_puta_9.

I do this
% seqmatchall
All-against-all comparison of a set of sequences
Input sequence set: rtt109_h_puta*
Segmentation fault (core dumped)

this is the core
-rw-r--r--    1 nicolas  user      2490368 Jun  1 03:15 core

What I am doing wrong? What is the segmentation fault?

Thanks for any help

nicolas



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