[EMBOSS] help with Profit

Mehta, Perdeep Perdeep.Mehta at STJUDE.ORG
Fri Jul 27 22:13:27 UTC 2007


I am trying to search swissprot protein database with the "Profit"
program. Somehow after running for a while Profit produces following out
put that has no data in it. Here is the text in the generated output

# PROF scan using Henikoff profile pdz_henikoff.prf
# Scores >= threshold 75 (max score 88.53)

Does any one have a clue what's wrong with it?  I checked the
installation of swissprot database it works fine I could fetch a
sequence out with seqret.

Thanks in advance for any help.

Hartwell Center for Bioinformatics & Biotechnology
St. Jude Children's Research Hospital
Memphis, TN 38105-2794
Tel: 901-495 3774

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