[EMBOSS] relative abundance/word bias application

Simon Andrews simon.andrews at bbsrc.ac.uk
Fri Jul 27 08:24:19 UTC 2007


On 26 Jul 2007, at 17:44, Eliot Bush wrote:

> hello,
>
> I'm wondering if people have any interest in including in EMBOSS an
> application to calculate the relative abundance/bias of words.
>
> I've been working on some code
> which is able calculate this measure up to 10 or 11 bp words in
> reasonable amounts of time. If there is interest, I would be happy to
> contribute it.

Yes, I was just discussing doing this kind of analysis yesterday.   
We'd certainly appreciate code in EMBOSS which could do this kind of  
calculation.

Cheers

Simon.




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