[EMBOSS] Output from seqret in fastaformat.

[Rodrigo Lopez]

Hi,

Use -osdbname UNIPROT in the command line.

R:)

JK (Jesper Agerbo Krogh) wrote:
> Hi.. 
> 
> I've godt dbxflat to index the swissprot database.. but I'd like to have the output 
> formatted with the USA as the fasta ID. 
> 
> Current..:
> 
> seqret UNIPROT:Q12345
> Reads and writes (returns) sequences
> output sequence(s) [ies3_yeast.fasta]:
> 
>> IES3_YEAST Q12345 Ino eighty subunit 3.
> MKFEDLLATNKQVQFAHAATQHYKSVKTPDFLEKDPHHKKFHNADGLNQQGSSTPSTATD
> ANAASTASTHTNTTTFKRHIVAVDDISKMNYEMIKNSPGNVITNANQDEIDISTLKTRLY
> KDNLYAMNDNFLQAVNDQIVTLNAAEQDQETEDPDLSDDEKIDILTKIQENLLEEYQKLS
> QKERKWFILKELLLDANVELDLFSNRGRKASHPIAFGAVAIPTNVNANSLAFNRTKRRKI
> NKNGLLENIL
> 
> .. but I'd like.. 
> 
>> UNIPROT:Q12345 Ino eighty subunit 3.
> MKFEDLLATNKQVQFAHAATQHYKSVKTPDFLEKDPHHKKFHNADGLNQQGSSTPSTATD
> ANAASTASTHTNTTTFKRHIVAVDDISKMNYEMIKNSPGNVITNANQDEIDISTLKTRLY
> KDNLYAMNDNFLQAVNDQIVTLNAAEQDQETEDPDLSDDEKIDILTKIQENLLEEYQKLS
> QKERKWFILKELLLDANVELDLFSNRGRKASHPIAFGAVAIPTNVNANSLAFNRTKRRKI
> NKNGLLENIL
> 
> Is that possible? 
> 
>