[EMBOSS] Antwort: question using 'matpatmotifs'

[David.Bauer at SCHERING.DE]

Hi Jean,

this is an old problem with patmatmotifs.
This program makes use only of the traditonal Prosite patterns and
unfortunately can not handle the newer type Prosite matrix entries.

Cheers,
David.

emboss-bounces at lists.open-bio.org schrieb am 18/01/2007 15:14:20:

> Hi,
>
> I used 'swissprot:hair_drome' as input sequence and run 'matpatmotifs'
in
> EMBOSS and got 0 hits. However, when I used the same input sequnce on
> interproscan, the result
>
(http://www.ebi.ac.uk/cgi-bin/iprscan/iprscan?tool=iprscan&jobid=iprscan-200

> 70118-14025926) show that it contains basic Helix-loop-helix motif which
is
> ID PS50888 in prosite database. Is this a bug or did I do something
wrong? I
> also run the same sequence against the 'motifs' program in GCG package.
> Again no hit was found.
>
> Thank you.
>
> Jean Mao
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