[EMBOSS] seqret error

Peter Rice pmr at ebi.ac.uk
Sun Aug 5 15:31:24 UTC 2007


Guido Vacano wrote:
> Hello--
> 
>     I'm getting an error as follows:
> 
> -------
> $ seqret nt:EF348590
> Reads and writes (returns) sequences
> 
>    EMBOSS An error in ajindex.c at line 2424:
> GetKeys: No keys in node
> --------
> 
> The nt database is a FASTA file from NCBI, and I used dbxfasta. 

Does the database have accession numbers? There should be a count in the 
*.pxac file from the dbxfasta run.

If you run seqret with -debug and send the seqret.dbg file to 
emboss-bug at emboss.open-bio.org it will help to trace the problem.

regards,

Peter



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