[EMBOSS] Fwd: emboss-4.1.0-1 on a (new) intel iMac

[Koen van der Drift]

Hi,

I am the maintainer of the fink package for emboss. A user reported  
the following error on an Intel iMac because crypt.h is missing. On a  
Mac most of the the functions in crypt.h are in unistd.h. So I could  
replace the #include crypt.h with #include unistd.h. Another reader  
was wondering why crypt.h is needed, is there a situation when emboss  
needs a password? In that case I could just comment out the  
#include.  BTW, on a PPC iMac, there is no error because of:

#if !defined(__ppc__) && !defined(__FreeBSD__)
#include <crypt.h>
#endif

thanks,

- Koen.



Begin forwarded message:

> gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION= 
> \"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE= 
> \"EMBOSS\" -DVERSION=\"4.1.0\" -DSTDC_HEADERS=1 - 
> DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 - 
> DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 - 
> DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 - 
> DHAVE_DLFCN_H=1 -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 - 
> DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 - 
> DHAVE_UNISTD_H=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 - 
> DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 - 
> DHAVE_MEMMOVE=1 -DHAVE_LIBM=1 -DPLD_png=1 -I. -I. -DAJAX_FIXED_ROOT= 
> \"/sw/src/fink.build/emboss-4.1.0-1/EMBOSS-4.1.0/emboss\" -DPREFIX= 
> \"/sw\" -I../plplot -DPOSIX_MALLOC_THRESHOLD=10 -DAJ_MACOSXLF - 
> Dstat64=stat -I/sw/include -DLENDIAN -I/System/Library/Frameworks/ 
> JavaVM.framework/Versions/1.4.2/Home -DHAVE_JAVA -I/System/Library/ 
> Frameworks/JavaVM.framework/Versions/1.4.2/Home/include -DNO_AUTH - 
> O1 -c ajjava.c  -fno-common -DPIC -o .libs/ajjava.o
> ajjava.c:93:19: error: crypt.h: No such file or directory
> ajjava.c: In function  
> 'Java_org_emboss_jemboss_parser_Ajax_seqsetType':
> ajjava.c:335: warning: 'ajSeqsetLen' is deprecated (declared at  
> ajseq.h:240)
> ajjava.c:337: warning: 'ajSeqsetTotweight' is deprecated (declared  
> at ajseq.h:259)
> ajjava.c: In function 'Java_org_emboss_jemboss_parser_Ajax_fork':
> ajjava.c:1251: warning: passing argument 1 of 'ajSysStrtokR'  
> discards qualifiers from pointer target type
> ajjava.c: In function 'make_array':
> ajjava.c:1525: warning: passing argument 1 of 'ajSysStrtokR'  
> discards qualifiers from pointer target type
> make[1]: *** [ajjava.lo] Error 1
> make: *** [all-recursive] Error 1
> ### execution of make failed, exit code 2
> Removing runtime build-lock...
> Removing build-lock package...
> /sw/bin/dpkg-lockwait -r fink-buildlock-emboss-4.1.0-1
> (Reading database ... 144792 files and directories currently  
> installed.)
> Removing fink-buildlock-emboss-4.1.0-1 ...
> Failed: phase compiling: emboss-4.1.0-1 failed
>