[EMBOSS] extracting noncoding regions
Mukatira, Suraj
Suraj.Mukatira at STJUDE.ORG
Tue Oct 31 18:30:00 UTC 2006
I use BioPerl as well. Extraction of non-coding regions and features
like intron, UTR etc. would certainly be useful from within EMBOSS.
Suraj Mukatira
-----Original Message-----
From: emboss-bounces at lists.open-bio.org
[mailto:emboss-bounces at lists.open-bio.org] On Behalf Of Ryan Golhar
Sent: Tuesday, October 31, 2006 11:03 AM
To: 'Peter Rice'; 'Shrish Tiwari'
Cc: emboss at emboss.open-bio.org
Subject: Re: [EMBOSS] extracting noncoding regions
I think that would be a useful feature...I have a need for it now and
currently use a Bioperl script to parse out noncoding regions from a
GenBank entry...
> -----Original Message-----
> From: emboss-bounces at lists.open-bio.org
> [mailto:emboss-bounces at lists.open-bio.org] On Behalf Of Peter Rice
> Sent: Tuesday, October 31, 2006 10:34 AM
> To: Shrish Tiwari
> Cc: emboss at emboss.open-bio.org
> Subject: Re: [EMBOSS] extracting noncoding regions
>
>
> Hi Shrish,
>
> Shrish Tiwari wrote:
> > Hi!
> > Is there a way of extracting the noncoding regions of a
> genome using
> > an EMBOSS program?
>
> That is a simple change to coderet to return non-coding
> sequence (exclude the
> CDS and mRNA features).
>
> Does anyone else want this? We can do it for the next release.
>
> regards,
>
> Peter
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