[EMBOSS] Antwort: showfeat troubles

David.Bauer at schering.de David.Bauer at schering.de
Tue Oct 31 13:54:03 UTC 2006


I don't get this problem. Showfeat displays CDS from both strands with
EMBL and GenBank files.
What is the source of your Genbankf file ? Maybe the format is not
perfectly correct ?


emboss-bounces at lists.open-bio.org schrieb am 31/10/2006 13:18:36:

> Hi!
> I used the following command to extract only positions of CDS from gbk
> showfeat -pos -matchtype CDS -width 0
> But I noticed that the program does not extract positions of CDS
> that lie on the complementary strand, e.g. CDS
> complement(5683..6459) did not show up in the resultant file. Any
> ideas on how I can get showfeat to extract these positions too.
> Shrish
> Dr. Shrish Tiwari
> E503, Centre for Cellular and Molecular Biology
> Uppal Road, Hyderabad - 500 007, INDIA
> Phone: 91-40-27192777
> Alternate email: shrish.geo at yahoo.com
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