[EMBOSS] Antigenic - input file format?
km
km at mrna.tn.nic.in
Tue Oct 24 21:28:57 UTC 2006
Hi,
> I want to use the package called 'Antigenic' in EMBOSS.
> I am not quite clear about the input file format to be used.
pls consult EMBOSS documentation on the system by typing
$tfm antigenic
> How can I input a fasta file to the program?
first check:
tfm antigenic
then, assuming that ur set of sequence(s) are in a textfile(myseqs.fa) in fasta format run:
$antigenic -sequence myseqs.fa
> is it possible to use a text file that has the amino acid sequence in a fasta format?
yes
>In which folder should the file be?
simple solution would be that the sequence
current folder
regards,
KM
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