[EMBOSS] EMBOSS database setup
ajb at ebi.ac.uk
ajb at ebi.ac.uk
Thu Nov 30 16:27:40 UTC 2006
The appended definitions are simple ones that may be
useful if you only want a few sequences at a time.
If sites upgrade to SRS8 then alter accordingly.
Alan
DB embl [ type: N method: srswww format: embl release: "EBI"
url: "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz"
comment: "EMBL from the EBI" ]
DB em [ type: N method: srswww format: embl release: "EBI"
url: "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz"
dbalias: "EMBL"
comment: "EMBL from the EBI" ]
DB swissprot [ type: P method: srswww format: swiss release: "EBI"
url: "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz"
comment: "SWISSPROT from the EBI" ]
DB sw [ type: P method: srswww format: swiss release: "EBI"
url: "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz"
dbalias: "SWISSPROT"
comment: "SWISSPROT from the EBI" ]
DB uniprot [ type: P method: srswww format: swiss release: "EBI"
url: "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz"
comment: "UNIPROT from the EBI" ]
DB uni [ type: P method: srswww format: swiss release: EBI
url: "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz"
dbalias: "UNIPROT"
comment: "UNIPROT from the EBI" ]
DB pir [ type: P method: srswww format: nbrf release: "EBI"
url: "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz"
comment: "PIR from the EBI" ]
DB genbank [ type: N method: srswww format: genbank release: "NCBI"
url: "http://www.infobiogen.fr/srs7bin/cgi-bin/wgetz"
comment: "GenBank from Infobiogen" ]
DB gb [ type: N method: srswww format: genbank release: "NCBI"
url: "http://www.infobiogen.fr/srs7bin/cgi-bin/wgetz"
dbalias: "GENBANK"
comment: "GenBank from Infobiogen" ]
DB refseq [ type: N method: srswww format: genbank release: "NCBI"
url: "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz"
comment: "REFSEQ from EBI" ]
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