[EMBOSS] EMBOSS database setup

ajb at ebi.ac.uk ajb at ebi.ac.uk
Thu Nov 30 16:27:40 UTC 2006


The appended definitions are simple ones that may be
useful if you only want a few sequences at a time.
If sites upgrade to SRS8 then alter accordingly.

Alan

DB embl [  type: N method: srswww format: embl release: "EBI"
  url: "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz"
  comment: "EMBL from the EBI" ]

DB em [  type: N method: srswww format: embl release: "EBI"
  url: "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz"
  dbalias: "EMBL"
  comment: "EMBL from the EBI" ]

DB swissprot [  type: P method: srswww format: swiss release: "EBI"
  url: "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz"
  comment: "SWISSPROT from the EBI" ]

DB sw [  type: P method: srswww format: swiss release: "EBI"
  url: "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz"
  dbalias: "SWISSPROT"
  comment: "SWISSPROT from the EBI" ]

DB uniprot [  type: P method: srswww format: swiss release: "EBI"
  url: "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz"
  comment: "UNIPROT from the EBI" ]

DB uni [  type: P method: srswww format: swiss release: EBI
  url: "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz"
  dbalias: "UNIPROT"
  comment: "UNIPROT from the EBI" ]

DB pir [  type: P method: srswww format: nbrf release: "EBI"
  url: "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz"
  comment: "PIR from the EBI" ]

DB genbank [  type: N method: srswww format: genbank release: "NCBI"
  url: "http://www.infobiogen.fr/srs7bin/cgi-bin/wgetz"
  comment: "GenBank from Infobiogen" ]

DB gb [  type: N method: srswww format: genbank release: "NCBI"
  url: "http://www.infobiogen.fr/srs7bin/cgi-bin/wgetz"
  dbalias: "GENBANK"
  comment: "GenBank from Infobiogen" ]

DB refseq [  type: N method: srswww format: genbank release: "NCBI"
  url: "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz"
  comment: "REFSEQ from EBI" ]






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