[EMBOSS] Emboss-explorer error - Checked by AntiVir DEMOversion -

[Ryan Golhar]

> -----Original Message-----
> From: emboss-bounces at lists.open-bio.org 
> [mailto:emboss-bounces at lists.open-bio.org] On Behalf Of Jean Mao
> Sent: Friday, November 03, 2006 6:56 AM
> To: 'Guy Bottu'; Sumit Middha
> Cc: emboss at emboss.open-bio.org
> Subject: Re: [EMBOSS] Emboss-explorer error - Checked by 
> AntiVir DEMOversion -
> 
> 
> Is there a temporary solution that I can do to EMBOSS-4.0.0 
> to fix the datatype errors instead of waiting for solution 
> from Luke? I sent several emails to him but got no response 
> at all for a long while. Thank you very much!
> 
> Jean   


I have a fix to this:

In the XHTML.pm file, located in
/usr/lib/perl5/site_perl/5.8.0/EMBOSS/GUI, you can apply this patch:

---BEGIN---
--- XHTML.pm    2006-11-10 23:38:31.000000000 -0500
+++ /usr/lib/perl5/site_perl/5.8.0/EMBOSS/GUI/XHTML.pm  2006-11-10
23:41:34.000000000 -0500
@@ -955,6 +955,10 @@
        &_acd_infile;
 }
 
+sub _acd_pattern {
+       &_text_field_html;
+}
+
 sub _acd_sequence {
        my ($self, $param) = @_;
---END---

Basically, add the function _acd_pattern to XHTML.pm.  I can email you a
fresh copy of XHTML.pm if you would like instead of applying a patch.
I'll post this fix up on sourceforge as well.  

Ryan