[EMBOSS] Jemboss patch on the EMBOSS ftp server

Ryan Golhar golharam at umdnj.edu
Wed Nov 8 20:15:36 UTC 2006

Hi Alan,

I downloaded and applied the patch file.  Building EMBOSS fails.  I
looked into it more and it looks like there are some new additional
files in jemboss, specifically in org/emboss/jemboss/gui/form.  The
patch file only mentioned that the file is new but it doesn't contain
the contents of the file.  

Are the new files in the EMBOSS-4.0.0.tar.gz file or just available from
the jemboss-08112006.jar file?


> -----Original Message-----
> From: emboss-bounces at lists.open-bio.org 
> [mailto:emboss-bounces at lists.open-bio.org] On Behalf Of ajb at ebi.ac.uk
> Sent: Wednesday, November 08, 2006 9:18 AM
> To: emboss at emboss.open-bio.org
> Subject: [EMBOSS] Jemboss patch on the EMBOSS ftp server
> There is now a fix for Jemboss on the EMBOSS ftp server. This 
> fixes a problem involving the specification of mismatches in 
> "the fuzzies" (i.e. fuzznuc etc).
> See the 
> ftp://emboss.open-> bio.org/pub/EMBOSS/fixes/README.fixes    or 
> the

files to find out how to apply the fix. The patch-1-19.gz file in the
patches directory will, of course, apply all fixes to date when used
with a fresh download of EMBOSS-4.0.0.tar.gz.


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