[EMBOSS] Does emboss have a handy way for mutate a protein sequence?
pmr at ebi.ac.uk
Tue Mar 7 13:55:39 UTC 2006
Zhiqiang Ye wrote:
> Dear all,
> Does emboss have a handy way for mutate a protein sequence by
> the specified way?
> For example, I have a sequence foo.fasta
> It has a mutant called 'A2L'. Is there any way to do this operation
> to output(with an option to check the foo.fasta has 'A' at position
EMBOSS has several programs to change sequences. None does exactly what you ask.
You could look at:
biosed (does what you ask for longer replacements, but will change all 'A's to
We could extend biosed to specify the position of the pattern ... is that what
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