[EMBOSS] Error with dbiflat and Refseq

[Aengus Stewart]

Hi Sorry for asking this but

dbiflat is dying on me with the refseq nucleotides

I am using

dbiflat -dbname RefSeqN -idformat refseq -directory . -filenames "*.gbff" -release 17.0 -date 14/06/06 -fields "acnum,seqvn,des,keyword,taxon"

and I get

Warning: Duplicate ID skipped: 'XM_757618' All hits will point to first ID found
Warning: Duplicate ID skipped: 'XM_757619' All hits will point to first ID found
Warning: Duplicate ID skipped: 'XM_757620' All hits will point to first ID found

   EMBOSS An error in embdbi.c at line 1238:
Error in embDbiSortWriteFields, expected entry NM_001004399 not found


I know its probably something simple, but for the life of me I cant see it.............

Any suggestions?


Regards
Aengus



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Aengus Stewart
Group Leader
Bioinformatics and BioStatistics               Tel: +44 (0)20 7269 3679
Cancer Research UK, Lincoln's Inn Fields, Holborn, London, WC2A 3PX, UK
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