[EMBOSS] infoseq table format issues
Peter Rice
pmr at ebi.ac.uk
Fri Feb 10 11:45:41 UTC 2006
Marc Logghe wrote:
> Hi all,
> I have noticed that the output table format of infoseq is not
> consistent. In the sense that the whitespace field separator is
> sometimes two spaces and sometimes a tab followed by a space. This makes
> it impossible (at least, if you don't want an extra processing step) to
> properly import the infoseq output into a spreadsheet. Is there a way to
> force infoseq to use tabs only as field separator ?
Yes .... but ...
infoseq produces a report or HTML.
Is the HTML useful?
Is the text output useful (and is it better to use spaces as text)
Is tab-delimited output useful (also for other programs)?
Do we need some kind of XML output to replace the HTML?
Meanwhile, I will look at cleaning up the current infoseq
regards,
Peter
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