[EMBOSS] seqretsplit in batch mode

Andres Pinzon andrespinzon at gmail.com
Mon Feb 6 18:15:15 UTC 2006


Hi all,
Im trying to use seqretsplit in thousands of fasta files in a
directory at once. But it fails (I think) because for each fasta file
one is supoussed to hit <ENTER>, for instance:

andipin at linux:~/BYB/byDir> seqretsplit 11150.fasta
Reads and writes (returns) sequences in individual files
Output sequence [q3ybd3.fasta]:   <--- HIT ENTER!!!!

Anybody knows how can i tell seqretsplit not to prompt for the Output sequence?
Best regards,

--
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Andrés Pinzón [http://www.andrespinzon.com]
Bioinformatics Center, Colombia EMBnet node
Biotechnology Institute - National University of Colombia
http://bioinf.ibun.unal.edu.co
Tel +57 3165000 ext 16961 Fax +571 3165415
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