[EMBOSS] Output from seqret in fastaformat.

JK (Jesper Agerbo Krogh) JK at novozymes.com
Wed Dec 6 12:34:38 UTC 2006


Hi.. 

I've godt dbxflat to index the swissprot database.. but I'd like to have the output 
formatted with the USA as the fasta ID. 

Current..:

seqret UNIPROT:Q12345
Reads and writes (returns) sequences
output sequence(s) [ies3_yeast.fasta]:

>IES3_YEAST Q12345 Ino eighty subunit 3.
MKFEDLLATNKQVQFAHAATQHYKSVKTPDFLEKDPHHKKFHNADGLNQQGSSTPSTATD
ANAASTASTHTNTTTFKRHIVAVDDISKMNYEMIKNSPGNVITNANQDEIDISTLKTRLY
KDNLYAMNDNFLQAVNDQIVTLNAAEQDQETEDPDLSDDEKIDILTKIQENLLEEYQKLS
QKERKWFILKELLLDANVELDLFSNRGRKASHPIAFGAVAIPTNVNANSLAFNRTKRRKI
NKNGLLENIL

.. but I'd like.. 

>UNIPROT:Q12345 Ino eighty subunit 3.
MKFEDLLATNKQVQFAHAATQHYKSVKTPDFLEKDPHHKKFHNADGLNQQGSSTPSTATD
ANAASTASTHTNTTTFKRHIVAVDDISKMNYEMIKNSPGNVITNANQDEIDISTLKTRLY
KDNLYAMNDNFLQAVNDQIVTLNAAEQDQETEDPDLSDDEKIDILTKIQENLLEEYQKLS
QKERKWFILKELLLDANVELDLFSNRGRKASHPIAFGAVAIPTNVNANSLAFNRTKRRKI
NKNGLLENIL

Is that possible? 


-- 
Jesper Krogh





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