[EMBOSS] Output from seqret in fastaformat.
JK (Jesper Agerbo Krogh)
JK at novozymes.com
Wed Dec 6 12:34:38 UTC 2006
Hi..
I've godt dbxflat to index the swissprot database.. but I'd like to have the output
formatted with the USA as the fasta ID.
Current..:
seqret UNIPROT:Q12345
Reads and writes (returns) sequences
output sequence(s) [ies3_yeast.fasta]:
>IES3_YEAST Q12345 Ino eighty subunit 3.
MKFEDLLATNKQVQFAHAATQHYKSVKTPDFLEKDPHHKKFHNADGLNQQGSSTPSTATD
ANAASTASTHTNTTTFKRHIVAVDDISKMNYEMIKNSPGNVITNANQDEIDISTLKTRLY
KDNLYAMNDNFLQAVNDQIVTLNAAEQDQETEDPDLSDDEKIDILTKIQENLLEEYQKLS
QKERKWFILKELLLDANVELDLFSNRGRKASHPIAFGAVAIPTNVNANSLAFNRTKRRKI
NKNGLLENIL
.. but I'd like..
>UNIPROT:Q12345 Ino eighty subunit 3.
MKFEDLLATNKQVQFAHAATQHYKSVKTPDFLEKDPHHKKFHNADGLNQQGSSTPSTATD
ANAASTASTHTNTTTFKRHIVAVDDISKMNYEMIKNSPGNVITNANQDEIDISTLKTRLY
KDNLYAMNDNFLQAVNDQIVTLNAAEQDQETEDPDLSDDEKIDILTKIQENLLEEYQKLS
QKERKWFILKELLLDANVELDLFSNRGRKASHPIAFGAVAIPTNVNANSLAFNRTKRRKI
NKNGLLENIL
Is that possible?
--
Jesper Krogh
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