[EMBOSS] Installation problems of EMBOSS explorer
golharam at umdnj.edu
Fri Aug 25 15:25:30 UTC 2006
It looks like you need to install other perl modules includes
Mail::Send, and Parse::RecDescent.
If you don't have root permission to install, then you can install in a
local directory. I *think* the command is 'make
DESTDIR=/home/sea/perl5.8.5 install' where DESTDIR is the variable to
indicate the installation root.
From: emboss-bounces at lists.open-bio.org
[mailto:emboss-bounces at lists.open-bio.org] On Behalf Of Sea
Sent: Thursday, August 24, 2006 11:49 PM
To: emboss at lists.open-bio.org
Subject: Re: [EMBOSS] Installation problems of EMBOSS explorer
Here is the error shown:
server: emboss [source/emboss-explorer]> ./install
installing EMBOSS Explorer perl modules...
Warning: prerequisite Mail::Send failed to load: Can't locate
Mail/Send.pm in @INC (@INC contains:
/usr/perl5/vendor_perl/5.6.1 /usr/perl5/vendor_perl .) at (eval 4) line
Warning: prerequisite Parse::RecDescent failed to load: Can't locate
Parse/RecDescent.pm in @INC (@INC contains:
/usr/perl5/vendor_perl/5.6.1 /usr/perl5/vendor_perl .) at (eval 5) line
3. 'PREREQ_FATAL' is not a known MakeMaker parameter name. Writing
Makefile for EMBOSS::GUI Manifying blib/man3/EMBOSS::GUI.3 Manifying
blib/man3/EMBOSS::GUI::XHTML.3 Manifying blib/man3/EMBOSS::GUI::Conf.3
Manifying blib/man3/EMBOSS::ACD.3 Manifying blib/man3/EMBOSS::GUI.3
Warning: You do not have permissions to install into
/usr/perl5/5.6.1/lib/ExtUtils/Install.pm line 85. mkdir
/usr/perl5/site_perl/5.6.1/EMBOSS: Permission denied at
/usr/perl5/5.6.1/lib/ExtUtils/Install.pm line 138
*** Error code 255
make: Fatal error: Command failed for target `pure_site_install'
I guess that I don't have a root privilege so can't access the
/usr/perl5 directory. Thus I installed perl 5.8.5 in my folder and then
modified the emboss-explorer "Makefile", but still failed.
Hope any experienced friends give me some suggestions. :-)
On 8/23/06, Ryan Golhar <golharam at umdnj.edu> wrote:
> What are the errors you are getting?
> -----Original Message-----
> From: emboss-bounces at lists.open-bio.org
> [mailto:emboss-bounces at lists.open-bio.org] On Behalf Of Sea
> Sent: Wednesday, August 23, 2006 9:01 AM
> To: emboss at lists.open-bio.org
> Subject: [EMBOSS] Installation problems of EMBOSS explorer
> This is my first time to install EMBOSS explorer,
> but I couldn't install successfully.
> It showed some error messages and seem problems about the perl module.
> Because I used a non-root-privilege account to do the thing and
> installed a non-default directory, I'm not sure whether it caused that
> Would any experienced friends tell me some hints?
> Thanks a lot! :-)
> EMBOSS mailing list
> EMBOSS at lists.open-bio.org
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