[EMBOSS] how to using Einverted to process a file contain multiple sequences

[Francis Tang]

Hi Zhendong,

I've had to run einverted on a file with many sequences before.

If I remember correctly, I used seqret to create a new file for each 
sequence, and then used bash's for+glob expansion to run einverted many 
times.

Sorry this mail is so vague - it's been a long while since I've used 
emboss.  If you haven't solved the problem already and the clues above 
don't make it obvious, write back and I'll work it out again.

Cheers.

Francis.

zhendong shaw wrote:
> Since the Einverted program is designed to process only one sequences a
> time. Are there any ways to handle a file in fasta format containing
> multiple sequences?
> The input file just like follow:
>> seq1
> ATTTTTTTTTTTTTTTTTTTT
>> seq2
> TTTAAAAAAAAAAAAAAA
> .......
> 
> sth like that....


-- 
www.chukhang.com/francis