[EMBOSS] Embossdata -reject option - Checked by AntiVir DEMO versio

[Marc Logghe]

Hi Guy !

> You can look in the file  .../share/EMBOSS/acd/embossdata.acd :
> 
>   selection: reject  [
>     default: "3, 5, 6"
>     minimum: "1"
>     maximum: "6"
>     values: "None, AAINDEX, CVS, CODONS, PRINTS, PROSITE, REBASE"
>     delimiter: ","
>     header: "Directories to ignore"
>     information: "Select directories"
>     help: "This specifies the names of the sub-directories of the
>            EMBOSS data directory that should be ignored when 
> displaying data
>            directories."
>     button: "Y"
>   ]
> 
> So, by default CVS, PRINTS and PROSITE are rejected.
 
Yes, that makes sense now !

> This does not work, there is no way to reject the files in 
> the base data directory. The best you can do is to add on the 
> command line
> -reject=2,3,5,6,7 or -reject= 
> AAINDEX,CVS,PRINTS,PROSITE,REBASE What you can do however is :
> ls $EMBOSS_DATA/CODONS

Yeah, that is of course the most obvious ;-) Thing is that I wanted to
do it in an emboss-only way so that it would be possible to run the
emboss command via a soaplab service. The latter should provide a means
to dynamically fetch a list of codon usage tables. More or less like
showdb is doing.
> 
> 	Hope this helps,
Yes it did. Thanks !
Regards,
Marc