[EMBOSS] nt-multi-fastA-file

[simon andrews (BI)]

On 12 Apr 2006, at 10:09, Christiane Nerz wrote:

> Hi all,
>
> I put the gb-file of an whole genome in Artemis.
> Is there a possibility to export a multi-FastA-file with the bases of
> all ORFs?

If you can save the file out of Artemis with the ORFs shown in the 
feature table then you can use coderet in EMBOSS to extract out all of 
the subsequences covering those features, either as protein or DNA.

Hope this helps

Simon.
-- 
Simon Andrews PhD
Bioinformatics Dept.
The Babraham Institute

simon.andrews at bbsrc.ac.uk
+44 (0) 1223 496463