[EMBOSS] consensus sequence from Prettyplot and Cons

[forward at hongyu.org]

Hi there,

I am new to this group, sorry if it's a discussed question here.

I found there is difference between the consensus sequences generated for
the same alignment by the two programs: Prettyplot and Cons. I've tried
adjusting the parameters such as -plurality and -identity, but failed to
reconcile the two no matter how.

Please let me know if you have met the same problem or whether you have
good solution to it. Thanks!

-- 
Hongyu Zhang, Ph.D.
Computational Biologist
Ceres Inc.
1535 Rancho Conejo Blvd
Thousand Oaks, CA 91320
Phone: (805)376-6504 ext 1204