[EMBOSS] Cusp cfile option

[Marc Logghe]

> Hi Mark,
> 
> > I was wondering what the purpose was for the -cfile option in cusp.
> > After all, cusp *creates* a cut file, so why should it need one ?
> > Also, where can I find out about the species for the 
> CODONS/*.cut files.
> > I looked inside these for a comment or something, but 
> nothing was there.
> > For instance, Eyeast.cut is obvious, but what species is used for 
> > Eyen.cut ?
> 
> Changed a lot in EMBOSS 3.0.0. There was discussion at least 
> on the developers list. cusp no longer needs the file, 
> filenames have been cleaned up, and there is a list of 
> species attached to the files to make names clearer.
> 
> I'm not in the office today, best guess for Yen would be 
> Yersinia enterocolitica :-)
> 
Thanks Peter,
Think it is the right time for an upgrade ;-)
Cheers,
Marc