[EMBOSS] Segmentation fault when doing seqret

[Enrique de Andres Saiz]

Thanks. Indeed, there are some files larger than 2GB in EMBL. As David 
said, I have tried with dbxflat and now it goes well.
Regards,
Enrique.

Wells, Isabelle wrote:
> Hi,
> Are any of the EMBL flat files larger than 2GB? This is a problem when
> indexing with dbiflat and was already discussed on this list.
> Isabelle
> 
> -----Original Message-----
> From: emboss-bounces at emboss.open-bio.org
> [mailto:emboss-bounces at emboss.open-bio.org] On Behalf Of Enrique de
> Andres Saiz
> Sent: Thursday, October 13, 2005 10:38
> To: emboss at emboss.open-bio.org
> Subject: [EMBOSS] Segmentation fault when doing seqret
> 
> 
> Hello,
> 
> I'm trying to retrieve a sequence from embl using seqret command but I 
> obtain a segmentation fault error:
> 
> $> seqret embl:AC005155
> Reads and writes (returns) sequences
> Segmentation fault
> 
> This doesn't happen with every entry in the database. With another 
> entries, everything goes well.
> 
> I'm using emboss-3.0.0 and EMBL database is indexed using dbiflat.
> 
> Does anybody konws what could happen?
> 
> Thanks in advance,
> 
> Enrique.
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> EMBOSS at emboss.open-bio.org
> http://newportal.open-bio.org/mailman/listinfo/emboss
> 
> 
> 

-- 
Enrique de Andrés Saiz
Unidad de Bioinformática
Parque Científico de Madrid
Ctra. de Colmenar, Km. 15
Campus Universidad Autónoma de Madrid, Cantoblanco - Pabellón C
28049 Madrid

Phone:  +34 91 497 3448
Fax:    +34 91 497 3471
E-mail: enrique.deandres at pcm.uam.es