[EMBOSS] how to install help files with MYEMBOSS?

Martin Sarachu msarachu at biol.unlp.edu.ar
Tue Oct 4 18:34:46 UTC 2005

Dear Peter,

I can send the documentation for all wrappers4EMBOSS (BLAST, fastA, 
MUSCLE, etc) programs. Do you want me to send these to you?



pmr at ebi.ac.uk wrote:
> Dear Martin,
>>is there any way to install help files (both text and html) for your
>>custom applications using MYEMBOSS?
>>I intend to modify wrappers4EMBOSS package to install using MYEMBOSS but
>>I can't find a way to install the help files for them, just the source
>>and acd files. There is no doc/programs... directory, is there another
>>way of doing this?
> We will add these. There are plans to create separate directories for each
> of the EMBASSY packages (myemboss, phylip, domainatrix, hmmer, ...) under
> doc/programs instead of installing everything in one directory. We waited
> for EMBOSS 3.0.0 before trying to reorganize.
> One issue for the MYEMBOSS documentation ... we create the documentation
> from the sourceforge pages for each applicatiion. We will need a utility
> to complete the pages for MYEMBOSS programs which are written locally and
> will not have sourceforge pages as sources. These sourceforge pages have 9
> include files (the one line documentation, help and commandline table,
> example usage with input and output, related programs plus history and
> comments. We can generate all these include files automatically.
> If you have example MYEMBOSS programs you can send it would help us to
> make producing the documentation easier.
> regards,
> Peter Rice

Martin Sarachu
msarachu at biol.unlp.edu.ar

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